Package: biofetchR
Type: Package
Title: Download, Clean, Classify, Enrich and Export Biodiversity
        Occurrence Data
Version: 0.1.0
Authors@R: person(given = "Darren", family = "Stuart", email = "dstuart04@qub.ac.uk", role = c("aut", "cre"))
Description: Downloads, imports, cleans, classifies, enriches and
        exports biodiversity occurrence data, with an emphasis on
        reproducible Global Biodiversity Information Facility (GBIF)
        <https://api.gbif.org/v1/> workflows. The package supports
        batch occurrence downloads, taxonomic standardisation,
        coordinate cleaning, optional spatial thinning, spatial
        attribution and structured export of processed occurrence
        records and audit outputs. Terrestrial and freshwater workflows
        can join records to administrative units, protected areas,
        freshwater ecoregions, basins, rivers, lakes, reservoirs,
        wetlands and other contextual spatial overlays. Marine
        workflows support offshore and coastal records through joins to
        Marine Regions <https://www.marineregions.org/> style layers,
        Exclusive Economic Zone (EEZ) units, marine ecoregions, Large
        Marine Ecosystems and user-supplied marine overlays. The
        package also supports native-range and invasive-status evidence
        workflows using the World Register of Marine Species (WoRMS)
        <https://www.marinespecies.org/>, evidence derived from
        Standardising and Integrating Alien Species (SInAS)
        <https://zenodo.org/records/18220953>, and Global Register of
        Introduced and Invasive Species (GRIIS) <https://griis.org/>
        style species-country records. These tools are intended for
        biodiversity, macroecological and invasion-biology analyses
        where occurrence records need to be processed consistently,
        transparently and reproducibly.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.3.2
Depends: R (>= 4.1.0)
Imports: cli, CoordinateCleaner, countrycode, curl, dplyr, geodata,
        jsonlite, mregions2, readr, rgbif, rlang, sf, tibble
Suggests: geosphere, ggplot2, httr, knitr, lwgeom, mapme.biodiversity,
        osmdata, readxl, remotes, rmarkdown, rnaturalearth, stringi,
        stringr, terra, testthat (>= 3.0.0), tidyr, worrms
Config/testthat/edition: 3
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2026-07-22 07:37:56 UTC; root
Author: Darren Stuart [aut, cre]
Maintainer: Darren Stuart <dstuart04@qub.ac.uk>
Config/pak/sysreqs: libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev
        make libicu-dev libuv1-dev libxml2-dev libssl-dev libproj-dev
        librdf0-dev libsqlite3-dev libudunits2-dev libx11-dev
Repository: https://dstuart505.r-universe.dev
Date/Publication: 2026-07-21 09:50:02 UTC
RemoteUrl: https://github.com/cran/biofetchR
RemoteRef: HEAD
RemoteSha: 64ff807e6141a60037c02af9bcd85dfa5d093d60